Unable to build OpenSees2.2.0

bramesh · Post by **bramesh** » Tue Mar 16, 2010 1:48 pm

I am trying to build OpenSees in programming mode PARALLEL. I get the following error when building it.

FEM_ObjectBrokerAllClasses.cpp: In member function 'virtual LinearSOE* FEM_ObjectBrokerAllClasses::getNewLinearSOE(int)':
FEM_ObjectBrokerAllClasses.cpp

error: no matching function for call to 'DistributedBandSPDLinSOE::DistributedBandSPDLinSOE()'
/home/bramesh/ARC/Ozgur_Atlayan/OpenSees/SRC/system_of_eqn/linearSOE/bandSPD/DistributedBandSPDLinSOE.h:45: note: candidates are: DistributedBandSPDLinSOE::DistributedBandSPDLinSOE(BandSPDLinSolver&)
/home/bramesh/ARC/Ozgur_Atlayan/OpenSees/SRC/system_of_eqn/linearSOE/bandSPD/DistributedBandSPDLinSOE.h:43: note: DistributedBandSPDLinSOE::Dist

Any help on this is appreciated. Posting Makefile.def in next post.

bramesh · Post by **bramesh** » Tue Mar 16, 2010 1:50 pm

############################################################################
#
# Program: OpenSees
#
# Purpose: A Top-level Makefile to create the libraries needed
# to use the OpenSees framework.
#
# version created for Redhat 8.0 LINUX distribution
#
# Written: fmk
# Created: 01/2003
#
#
############################################################################

# %---------------------------------%
# | SECTION 1: PROGRAM |
# %---------------------------------%
#
# Specify the location and name of the OpenSees interpreter program
# that will be created (if this all works

HOME = $(HOME)/ARC/Ozgur_Atlayan/OpenSees
OpenSees_PROGRAM = $(HOME)/bin/OpenSees
OpenSees_PROGRAM_MPI = $(HOME)/bin/OpenSeesMPI

# %---------------------------------%
# | SECTION 2: MAKEFILE CONSTANTS |
# %---------------------------------%
#
# Specify the constants the are used as control structure variables in the Makefiles.

OPERATING_SYSTEM = LINUX
PROGRAMMING_MODE = PARALLEL
RELIABILITY = NO_RELIABILITY
GRAPHICS = NONE
DEBUG_MODE = NO_DEBUG

#PROGRAMMING_MODE = PARALLEL, SEQUENTIAL
#GRAPHICS = NONE, UsingOpenGL
#RELIABILITY = YES_RELIABILITY, NO_RELIABILITY
#DEBUG_MODE = DEBUG, NO_DEBUG

# %---------------------------------%
# | SECTION 3: PATHS |
# %---------------------------------%
#
# Note: if vendor supplied BLAS and LAPACK libraries or if you have
# any of the libraries already leave the directory location blank AND
# remove the directory from DIRS.

BASE =
# PUT YOUR HOME DIRECTOREY HERE
HOME = /home/bramesh/ARC/Ozgur_Atlayan/OpenSees
FE = $(HOME)/SRC

BLASdir = $(HOME)/OTHER/BLAS
CBLASdir = $(HOME)/OTHER/CBLAS
LAPACKdir = $(HOME)/OTHER/LAPACK
ARPACKdir = $(HOME)/OTHER/ARPACK
UMFPACKdir = $(HOME)/OTHER/UMFPACK
METISdir = $(HOME)/OTHER/METIS
SRCdir = $(HOME)/SRC
SUPERLUdir = $(HOME)/OTHER/SuperLU_3.0/SRC
SUPERLU_DISTdir = $(HOME)/OTHER/SuperLU_DIST_2.0/SRC

DIRS = $(BLASdir) \
$(CBLASdir) \
$(SUPERLUdir) \
$(LAPACKdir) \
$(ARPACKdir) \
$(UMFPACKdir) \
$(METISdir) \
$(SUPERLU_DISTdir) \
$(SRCdir)

# %-------------------------------------------------------%
# | SECTION 4: LIBRARIES |
# | |
# | The following section defines the libraries that will |
# | be created and/or linked with when the libraries are |
# | being created or linked with. |
# %-------------------------------------------------------%
#
# Note: if vendor supplied BLAS and LAPACK libraries leave the
# libraries blank. You have to get your own copy of the tcl/tk
# library!!
#
# Note: For libraries that will be created (any in DIRS above)
# make sure the directory exsists where you want the library to go!

FE_LIBRARY = $(HOME)/lib/libOpenSees.a
NDARRAY_LIBRARY = $(HOME)/lib/libndarray.a # BJ_UCD jeremic@ucdavis.edu
MATMOD_LIBRARY = $(HOME)/lib/libmatmod.a # BJ_UCD jeremic@ucdavis.edu
BJMISC_LIBRARY = $(HOME)/lib/libBJmisc.a # BJ_UCD jeremic@ucdavis.edu
LAPACK_LIBRARY = $(HOME)/lib/libLapack.a
BLAS_LIBRARY = $(HOME)/lib/libBlas.a
SUPERLU_LIBRARY = $(HOME)/lib/libSuperLU.a
CBLAS_LIBRARY = $(HOME)/lib/libCBlas.a
ARPACK_LIBRARY = $(HOME)/lib/libArpack.a
UMFPACK_LIBRARY = $(HOME)/lib/libUmfpack.a
METIS_LIBRARY = $(HOME)/lib/libMetis.a
DISTRIBUTED_SUPERLU_LIBRARY = $(HOME)/lib/libDistributedSuperLU.a

TCL_LIBRARY = /usr/lib/libtk8.4.so /usr/lib/libtcl8.4.so

ifeq ($(RELIABILITY), YES_RELIABILITY)
RELIABILITY_LIBRARY = $(HOME)/lib/libReliability.a
else
RELIABILITY_LIBRARY =
endif

# WATCH OUT .. These libraries are removed when 'make wipe' is invoked.

WIPE_LIBS = $(FE_LIBRARY) \
$(NDARRAY_LIBRARY) \
$(MATMOD_LIBRARY) \
$(DISTRIBUTED_SUPERLU_LIBRARY) \
$(SUPERLU_LIBRARY) \
$(ARPACK_LIBRARY) \
$(UMFPACK_LIBRARY) \
$(METIS_LIBRARY) \
$(LAPACK_LIBRARY) \
$(BLAS_LIBRARY) \
$(CBLAS_LIBRARY) \
$(RELIABILITY_LIBRARY)

# %---------------------------------------------------------%
# | SECTION 5: COMPILERS |
# | |
# | The following macros specify compilers, linker/loaders, |
# | the archiver, and their options. You need to make sure |
# | these are correct for your system. |
# %---------------------------------------------------------%

# ###################################################
# # Compilers
# ###################################################

CC++ = /local/bin/g++
CC = /local/bin/gcc
FC = /local/bin/gfortran
FORTRAN = /local/bin/gfortran
F90 =
LINKER = /apps/packages/openmpi-1.3.2-32/bin/mpicxx

AR = ar
ARFLAGS = cqls
ARCH = ar
ARCHFLAGS = cqls
RANLIB = ranlib
RANLIBFLAGS =

PROGRAMMING_FLAG =

ifeq ($(PROGRAMMING_MODE), PARALLEL)
OpenSees_PROGRAM = $(HOME)/bin/OpenSeesSP
PROGRAMMING_FLAG = -D_PARALLEL_PROCESSING
endif

ifeq ($(PROGRAMMING_MODE), PARALLEL_INTERPRETERS)
OpenSees_PROGRAM = $(HOME)/bin/OpenSeesMP
PROGRAMMING_FLAG = -D_PARALLEL_INTERPRETERS
endif

ifeq ($(GRAPHICS), UsinOpenGl)
GRAPHIC_FLAG = -D_GLX
GRAPHIC_LIBRARY = -L/usr/X11/R6/lib -lGL -lGLU
else
GRAPHIC_FLAG = -D_NOGRAPHICS
GRAPHIC_LIBRARY =
endif

ifeq ($(RELIABILITY), YES_RELIABILITY)
RELIABILITY_FLAG = -D_RELIABILITY
else
RELIABILITY_FLAG =
endif

ifeq ($(DEBUG_MODE), DEBUG)
DEBUG_FLAG = -D_G3DEBUG
else
DEBUG_FLAG =
endif

ifeq ($(DEBUG_MODE), DEBUG)

C++FLAGS = -Wall -g -pg -D_LINUX -D_UNIX $(GRAPHIC_FLAG) $(RELIABILITY_FLAG) $(DEBUG_FLAG) $(PROGRAMMING_FLAG) -D_TCL84
CFLAGS = -Wall -g -pg $(GRAPHIC_FLAG) $(RELIABILITY_FLAG) $(DEBUG_FLAG) $(PROGRAMMING_FLAG)
FFLAGS = -Wall
LINKFLAGS = -rdynamic -g -pg

else

C++FLAGS = -Wall -O2 -D_LINUX -D_UNIX -D_TCL84 -Wall $(GRAPHIC_FLAG) $(RELIABILITY_FLAG) $(DEBUG_FLAG) $(PROGRAMMING_FLAG) -ffloat-store $(MUMPS_FLAG)
CFLAGS = -Wall $(GRAPHIC_FLAG) $(RELIABILITY_FLAG) $(PROGRAMMING_FLAG) $(MUMPS_FLAG)
FFLAGS = -Wall
LINKFLAGS = -rdynamic

endif

# Misc
MAKE = make
CD = cd
ECHO = echo
RM = rm
RMFLAGS = -f
SHELL = /bin/sh

# %---------------------------------------------------------%
# | SECTION 6: COMPILATION |
# | |
# | The following macros specify the macros used in |
# | to compile the source code into object code. |
# %---------------------------------------------------------%

.SUFFIXES:
.SUFFIXES: .C .c .f .f90 .cpp .o .cpp

#
# %------------------%
# | Default command. |
# %------------------%
#
.DEFAULT:
@$(ECHO) "Unknown target $@, try: make help"
#
# %-----------------------------------------------%
# | Command to build .o files from source files. |
# %-----------------------------------------------%
#

.cpp.o:
@$(ECHO) Making $@ from $<
$(CC++) $(C++FLAGS) $(INCLUDES) -c $< -o $@
.C.o: @$(ECHO) Making $@ from $<
$(CC++) $(C++FLAGS) $(INCLUDES) -c $< -o $@

.c.o:
@$(ECHO) Making $@ from $<
$(CC) $(CFLAGS) -c $<
.f.o:
@$(ECHO) Making $@ from $< $(FC) $(FFLAGS) -c $< -o $@

.f77.o:
@$(ECHO) Making $@ from $<
$(FC) $(FFLAGS) -c $< -o $@

.f90.o:
@$(ECHO) Making $@ from $<
$(FC90) $(FFLAGS) -c $< -o $@

# %---------------------------------------------------------%
# | SECTION 7: OTHER LIBRARIES |
# | |
# | The following macros specify other libraries that must |
# | be linked with when creating executables. These are |
# | platform specific and typically order does matter!! |
# %---------------------------------------------------------%
MACHINE_LINKLIBS = -L$(BASE)/lib \
-L$(HOME)/lib \

MACHINE_NUMERICAL_LIBS = -lm \
$(ARPACK_LIBRARY) \
$(DISTRIBUTED_SUPERLU_LIBRARY) \
$(SUPERLU_LIBRARY) \
$(UMFPACK_LIBRARY) \
$(LAPACK_LIBRARY) \
$(BLAS_LIBRARY) \
$(CBLAS_LIBRARY) \
$(GRAPHIC_LIBRARY)\
$(METIS_LIBRARY)\
$(RELIABILITY_LIBRARY)\
$(MUMPS_LIB)\
-lgfortran -ldl

MPICC = /apps/packages/openmpi-1.3.2-32/bin/mpicc
MPIINC = -I/apps/packages/openmpi-1.3.2-32/include
MPILIB = -L/apps/packages/openmpi-1.3.2-32/lib -lmpi

PARALLEL_LIB = $(FE)/system_of_eqn/linearSOE/sparseGEN/DistributedSuperLU.o \
$(FE)/system_of_eqn/linearSOE/sparseGEN/DistributedSparseGenColLinSOE.o \
$(DISTRIBUTED_SUPERLU_LIBRARY)

MUMPS = YES
MUMPS_DIR = /apps/packages/MUMPS_4.7.3
MUMPS_FLAG = -D_MUMPS -D_OPENMPI
MUMPS_INCLUDE = -I$(MUMPS_DIR)/include
MUMPS_LIB = -L$(MUMPS_DIR)/lib -ldmumps -lpord \
$(FE)/system_of_eqn/linearSOE/mumps/MumpsSOE.o \
$(FE)/system_of_eqn/linearSOE/mumps/MumpsSolver.o \
$(FE)/system_of_eqn/linearSOE/mumps/MumpsParallelSOE.o \
$(FE)/system_of_eqn/linearSOE/mumps/MumpsParallelSolver.o \

ifeq ($(PROGRAMMING_MODE), THREADS)
MACHINE_SPECIFIC_LIBS = -lpthread
else
MACHINE_SPECIFIC_LIBS = -ldl -lieee -lm -lc -lgfortran -Wl,-rpath,/local/lib -lpng $(MPILIB)
endif

# %---------------------------------------------------------%
# | SECTION 8: INCLUDE FILES |
# | |
# | The following macros specify include files needed for |
# | compilation. |
# %---------------------------------------------------------%

MACHINE_INCLUDES = $(MPIINC) \
-I/usr/local/BerkeleyDB.4.0/include \
-I/usr/include/mysql \
-I$(HOME)/include \
-I$(UMFPACKdir) \
-I$(SUPERLUdir) \
-I$(SUPERLU_DISTdir) \
$(MUMPS_INCLUDE)

# this file contains all the OpenSees/SRC includes
include $(FE)/Makefile.incl

INCLUDES = $(MACHINE_INCLUDES) $(TCL_INCLUDES) $(FE_INCLUDES)

Post by **fmk** » Wed Mar 17, 2010 9:39 am

you need to update your code using cvs

bramesh · Post by **bramesh** » Tue Apr 13, 2010 10:42 am

I am trying to update my source using the documentation provided by running

cvs -z3 checkout -PA OpenSees

I get the following error:

cvs checkout: authorization failed: server opensees.berkeley.edu rejected access to /usr/local/cvs for user anonymous
cvs checkout: used empty password; try "cvs login" with a real password

bramesh · Post by **bramesh** » Tue Apr 13, 2010 10:43 am

Never mind, I realized the password is anonymous and it is mentioned a few lines above. I was able to update it to the current cvs version.

bramesh · Post by **bramesh** » Tue Apr 13, 2010 11:27 am

I am still having issues building Opensees even after the cvs update:

The error being:

commands.cpp:264:36: error: TclOptimizationBuilder.h: No such file or directory

My Makefile.def is same as the one posted earlier.

Post by **fmk** » Tue Apr 13, 2010 4:03 pm

you need to include the -d option when you update .. the code is in the repository in the OpenSees/SRc/optimization directory.

bramesh · Post by **bramesh** » Thu Apr 15, 2010 8:19 am

I did the update using the -d option. I do see the header file in the directory you have mentioned. I still get the same error. My Makfefile.def is unchanged.

Post by **fmk** » Thu Apr 15, 2010 10:39 am

can you update again .. i had to check i nsome modified Makefile's.

ozgura · Post by **ozgura** » Tue Apr 20, 2010 6:59 pm

Frank,

Im writing this message on behalf of bramesh. He said he was banned in the forum probably because there was "h t t p" in his error message. We will appreciate if you can remove his ban.

Meanwhile he said he updated the code again and it went a bit forward, and then got this error message:

H T T P.cpp at line 300 for unknown escape sequence '\/'.

Thanks for your help.

Post by **fmk** » Wed Apr 21, 2010 2:39 pm

i have updated that file in CVS.

ozgura · Post by **ozgura** » Thu Apr 22, 2010 12:56 pm

Frank,

Here is the new error that we are getting.

ElasticTubularJoint.cpp: In member function 'virtual int ElasticTubularJoint::recvSelf(int, Channel&, FEM_ObjectBroker&)':
ElasticTubularJoint.cpp:492: error: unknown escape sequence: '\040'
make[3]: *** [ElasticTubularJoint.o] Error 1

Thanks

ozgura · Post by **ozgura** » Wed Apr 28, 2010 9:46 am

Frank,

Do you have any suggestions about that error?

Thanks